Protein Info for ABIE40_RS08200 in Rhizobium sp. OAE497

Annotation: VanZ family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 40 to 56 (17 residues), see Phobius details amino acids 61 to 79 (19 residues), see Phobius details amino acids 91 to 108 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 60% identity to rle:RL1952)

Predicted SEED Role

"FIG00986231: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>ABIE40_RS08200 VanZ family protein (Rhizobium sp. OAE497)
MITPKFMRPLAWLVLAGIVFVTISPIGLRPHTVTTVDFDRALTYAVTGFIFVLGYPKQWK
LIVLLLAVGAIAIEALQYFSPTRHARLHDGIIKGMGAAIGAMAAHGLLKIRARKAAPKAP
AEPASSSAALD