Protein Info for ABIE40_RS08045 in Rhizobium sp. OAE497

Annotation: replication-associated recombination protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 PF05496: RuvB_N" amino acids 24 to 151 (128 residues), 50.5 bits, see alignment E=7.4e-17 PF00004: AAA" amino acids 57 to 163 (107 residues), 58.5 bits, see alignment E=3.6e-19 PF16193: AAA_assoc_2" amino acids 186 to 262 (77 residues), 72.8 bits, see alignment E=7.9e-24 PF12002: MgsA_C" amino acids 263 to 428 (166 residues), 223 bits, see alignment E=8e-70

Best Hits

KEGG orthology group: K07478, putative ATPase (inferred from 93% identity to ret:RHE_CH01708)

Predicted SEED Role

"ATPase associated with chromosome architecture/replication"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>ABIE40_RS08045 replication-associated recombination protein A (Rhizobium sp. OAE497)
MSDDLFAPRIPDEVASRRPLADRLRPQTLSEVAGQGHLTGEDGVLRRMIESGSLGSMIFW
GPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAARLRRMDGRQTLLFVDEIH
RFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKSHDEESLSELLKR
AEEVEQKPLPLTEDARASLLRMADGDGRAVLTLAEEVWRAARPGEIFDTEGLTRIVQRRA
PVYDKAQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGL
ADPQALVICNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAFKAATMAAKQNGS
LLPPKHILNAPTKLMKDEGYNEGYRYDHDEPDAFSGQDYFPEKMGRKTFYDPPERGFERE
IRKRLEWWSKLRKERNPR