Protein Info for ABIE40_RS07990 in Rhizobium sp. OAE497

Annotation: DUF2809 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 135 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 37 to 60 (24 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details PF10990: DUF2809" amino acids 36 to 120 (85 residues), 68.6 bits, see alignment E=3e-23

Best Hits

KEGG orthology group: None (inferred from 62% identity to rec:RHECIAT_CH0001776)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (135 amino acids)

>ABIE40_RS07990 DUF2809 domain-containing protein (Rhizobium sp. OAE497)
MFKNGLGSRAGYAVATLLVIAAGLLLRRFGYPFGLPFIIVNYGAAALWGGMVFLILSLLF
APRVRSLNLAVLAVVLSAAVELFRLYHTPWLDAFRLTLTGALLIGRIFSIWNIVSYTLGI
AVACFIDAKLSQAAR