Protein Info for ABIE40_RS07030 in Rhizobium sp. OAE497

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 PF13181: TPR_8" amino acids 430 to 450 (21 residues), 14 bits, see alignment (E = 1.4e-05) PF13414: TPR_11" amino acids 502 to 543 (42 residues), 30 bits, see alignment 9.9e-11

Best Hits

KEGG orthology group: None (inferred from 56% identity to axy:AXYL_03857)

Predicted SEED Role

"FIG00793127: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (662 amino acids)

>ABIE40_RS07030 tetratricopeptide repeat protein (Rhizobium sp. OAE497)
MSSGVGTTVETADQQRPPLEICLLGPMAIRREGAELKLPGSRKVRALLAYLILAPYPQGR
AQLCDLFWDVADDPRGELRWCLSRIRSLIGERIIAHGDTVALDLAGCAIDAVEAAAAYRE
GLGGLPRERLRELADRSSGELLDGLVIERHPAFETWLVSQRRRFREIQAEILAAIADRLD
ASERLPYLDRWIEIAPFDLKPHELLLATLASEGRLREAEEHMKAAARAFAAEGLDAGSLR
RTWEGARNARTSAAAAAEPQPPEPAKSGARRASIAVMPFNDMSALAIPGGTADALVYDII
TRLSKLRTLRVIAQGTMFALRERPRSPGEIAAALDVDYVVNGTFERIATRLIVRLELTEA
RTNTIVWADSLDQNAAETLTLLEEIGTRVVASIEREVETLERNRAILKPPNSLDAWEAHH
RGLWHMFRFTKGDNDQARNFFETAISLDPTFARAYAGLSFTHFQSAFQHWADRDTETELA
YSAANQGLMADDRDPAAHLSLGRAHFLRKQHDQSVAELQQAVDLSPSFAIAHYSLAFVQC
QSGDPLSALAAADQSQSLSPFDPMLFGILASRAIALVRLGRFDEAADWAARAAARPNAHA
HIMAIAALCLAIAGRLDEGRAHVAALNLRYPGYRMDDFFIAFHLAPADQAPFRDGAKRVG
LE