Protein Info for ABIE40_RS05705 in Rhizobium sp. OAE497

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 161 to 185 (25 residues), see Phobius details PF00672: HAMP" amino acids 184 to 235 (52 residues), 51.3 bits, see alignment 2.4e-17 PF00512: HisKA" amino acids 242 to 305 (64 residues), 37.2 bits, see alignment E=5e-13 PF02518: HATPase_c" amino acids 351 to 467 (117 residues), 84.1 bits, see alignment E=2e-27 PF14501: HATPase_c_5" amino acids 359 to 445 (87 residues), 22.2 bits, see alignment E=2.3e-08

Best Hits

KEGG orthology group: None (inferred from 85% identity to rlg:Rleg_1075)

Predicted SEED Role

"Sensor protein basS/pmrB (EC 2.7.3.-)" in subsystem Lipid A modifications or Orphan regulatory proteins (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>ABIE40_RS05705 ATP-binding protein (Rhizobium sp. OAE497)
MNRFWFLFRSTAVRLSALYILLFAICAATLVIYVTAMSQRLLTGQIREAVQQEVDQVKRA
YDTGGINALLRSMERRSRQPGANLYIIAGPSGDILAGNVASVQPGVFEETGWTSVPFFYQ
RYAESGLDRRHMAIANIFVLDNGLRILVGRDLGEPERFRVLVRQALMVALAIMGLGALII
WFGIGRNALKRIDRMSAASKKIMAGDLSQRLPVGGSGDEFDRLSVSLNTMLERIEKLNEG
LRQVSDNIAHDLKTPLTRLRNKAADAVDTDDGEQRRVALEGIISESDQLIRTFNALLMIS
RVEAGSVAAEMSTVEISAIVADSAELYEPVADDAGLTLTSDIEPGISVQGNRELIGQALF
NLIDNAIKYSVDCDGHGQIAIKLARRQDAICLSVADSGAGVPADKREAVIKRFVRLDESR
SKPGTGLGLSLVEAVMELHGGTLELSDTYPDKEEGRGLTVTMHFPVKPA