Protein Info for ABIE40_RS05255 in Rhizobium sp. OAE497

Annotation: PRC-barrel domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF05239: PRC" amino acids 86 to 160 (75 residues), 50.3 bits, see alignment E=9.8e-18

Best Hits

KEGG orthology group: None (inferred from 81% identity to rle:RL0913)

Predicted SEED Role

"HYPOTHETICAL TRANSMEMBRANE SIGNAL PEPTIDE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>ABIE40_RS05255 PRC-barrel domain-containing protein (Rhizobium sp. OAE497)
MTRKLLTTVAAGALFATAFAPVAFSQSAPQPATPGATQSAPADATAPKMPDATAPAGDAA
QAPAPAASTDTAQAGGGTYLTEQGADQVSANTYIGQSVYTGQNESIGNVTDLIMKKDGGL
VAAVVGVGGFLGIGQKNVAVPMEKITVAQNTQDGSVKLTTTETADSLKAAPEFKTLQMQA
AEKAPAATGGTMPTDSTATGSTTTK