Protein Info for ABIE40_RS05165 in Rhizobium sp. OAE497

Annotation: peptidoglycan-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details PF01471: PG_binding_1" amino acids 137 to 191 (55 residues), 38.3 bits, see alignment E=1.3e-13 amino acids 250 to 304 (55 residues), 49 bits, see alignment E=5.7e-17

Best Hits

KEGG orthology group: None (inferred from 76% identity to rlt:Rleg2_0885)

Predicted SEED Role

"Peptidoglycan-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>ABIE40_RS05165 peptidoglycan-binding protein (Rhizobium sp. OAE497)
MAARKRKSPKGKRGRQQPGLLLTGAAALGGVGMTGASMLGGVVARNPSVAGGTVAFVVIF
SFVAANALWYQPGNHPHPFFRTRDLTSPFSIGRPSIEEPHPGDVTTFKIERPGEEGDAST
TNATPPANAATGQQPNQLVMDIQKELIRRGLYNGTADGVIGPRTSAAILFFEETVGMPQS
GDATPDVLAALKTDSVGPSTIPAEKPREDVTSQASAEDPVAAAIRSAEKQVKTAPAAPKQ
VTSGELTSVDLVLKIQKGLANMAYANVGVDGVAGEQTRAAIRHFQKHYNLPENGEPNEAV
LKKLKEIGAI