Protein Info for ABIE40_RS04920 in Rhizobium sp. OAE497

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 49 to 69 (21 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 224 to 244 (21 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details amino acids 301 to 319 (19 residues), see Phobius details amino acids 326 to 347 (22 residues), see Phobius details amino acids 357 to 380 (24 residues), see Phobius details amino acids 400 to 419 (20 residues), see Phobius details amino acids 461 to 484 (24 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 403 (388 residues), 154 bits, see alignment E=2.5e-49

Best Hits

KEGG orthology group: None (inferred from 72% identity to ara:Arad_1339)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (501 amino acids)

>ABIE40_RS04920 MFS transporter (Rhizobium sp. OAE497)
MTKPDMSKRILALAGICSAAAAMPLTFTGPAVALPAIAHSLGGSPIALNWVTNAFMLTFG
SSLMAAGTLADTYGRKRLFLSGLTAFLIFSVMLAFAPDILWFDLLRALQGLGAAATFSSG
MAALAQEFEGNARMRAFSIVGASFGVGLAFGPIASGLMAESFGWRSIFALVAALGLIAFV
LGANFLHETRDPDAAGLDWPGAASFTLALALLTYGVLLAPEQGWASLSVAALLAGAAALL
VAFWRIERSVARPMLDLSLFRYPRFVGVQLLAAAPAYAFVVLLILLPVRFVGIDGMSEVQ
AGQMMVALSGPLLVLPVVAGMLTRWFSAAVICSGGLLISAGGLFWLSATPSSDPALLIAP
LMMIGTGISLPWGLMDGLAVSVVPKERAGMATGIFSTTRVAGEGVALAVVSAVLSALIGT
RLGGDGAAAAAQRLVTGDLRAAGAAIPGMTSEALAATYAQAFSSLLVLLAGVTVFTAVVV
IAFLGRRPAETVEAACASPAE