Protein Info for ABIE40_RS04845 in Rhizobium sp. OAE497

Annotation: S9 family peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 702 PF02897: Peptidase_S9_N" amino acids 11 to 424 (414 residues), 289.7 bits, see alignment E=3.4e-90 PF00326: Peptidase_S9" amino acids 485 to 700 (216 residues), 225.8 bits, see alignment E=4.5e-71

Best Hits

KEGG orthology group: K01354, oligopeptidase B [EC: 3.4.21.83] (inferred from 92% identity to ret:RHE_CH01226)

Predicted SEED Role

"Protease II (EC 3.4.21.83)" (EC 3.4.21.83)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.21.83

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (702 amino acids)

>ABIE40_RS04845 S9 family peptidase (Rhizobium sp. OAE497)
MSVFKNLPNPPAAAKKPLSDTRHGVTRTDDYAWLRADNWQAMFKDPSILDPEIRKHLEAE
NTYMNAAMEDTKPLQTVLFSEMRGRIKEDDSSVPMKDGGFAYGTFFVTGGEQPHYFRIPR
DGDTKDETIRAVLLDGDKEAAGKSYFRLGGLDHSTDHSRGIWGYDDKGSEFFTLKVRDLA
TGEDLADVIENTGGGGIWAPDGKSFFYSALDENHRPSKVFHHILGTPQSDDRLVYEEKDP
GFFMGVGGSLLDDFIYIDIHDHETSEYRLLSTKDLTAEPKIVAEREEGIEYTLTEGGDVF
YILTNDGDAKDFKIVEAPVNAPDKANWREIVPHKPGTLIINHMAFARHLLWLERKDGLPQ
IMIRDRKTGEEHAIAFAEEAYSLGLSGAAEYDTDVIRFSYSSMTTPSQLYDYNMVTRERT
LLKTQEVPSGHNPDDYVTRRVFAPAWDGETVPVTLLYRKDTALDGSAPCLLYGYGAYGIT
IPAGFNTNCLSLADRGFVYAIAHIRGGKDKGFAWYENGKMEFKTNTFKDFIAAADYLNQQ
KFTSYAGIIAEGGSAGGMLMGAIANMAPEKFAGIIAAVPFVDVLNTMLDDTLPLTPPEWP
EWGNPIESREEYEQIAAYSPYDNVGAKAYPPLLALGGLTDPRVTYWEPAKWVAKLREKTT
GEAPILLKTNMDAGHGGASGRFQRLEEIAFEYSFAIKVAGKM