Protein Info for ABIE40_RS04560 in Rhizobium sp. OAE497

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 69 to 90 (22 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 134 to 151 (18 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 226 to 245 (20 residues), see Phobius details amino acids 274 to 294 (21 residues), see Phobius details amino acids 297 to 298 (2 residues), see Phobius details amino acids 310 to 328 (19 residues), see Phobius details amino acids 338 to 358 (21 residues), see Phobius details amino acids 364 to 386 (23 residues), see Phobius details amino acids 398 to 419 (22 residues), see Phobius details amino acids 427 to 446 (20 residues), see Phobius details PF07690: MFS_1" amino acids 74 to 404 (331 residues), 70 bits, see alignment E=9.3e-24

Best Hits

KEGG orthology group: None (inferred from 72% identity to rlt:Rleg2_0783)

Predicted SEED Role

"probable sugar transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>ABIE40_RS04560 MFS transporter (Rhizobium sp. OAE497)
MQIAVIQLFDLFRMTGCNHAPSHCITRIDIPITNYRFPIAPRGTTASASGTTSMPSAFSV
IIREPKIRIPAITLVALAFTYASTLPYQSIIGINELGMSDGAYSALVFFSALANVATSLT
LGIWSDRLGDRRPLVLMLSVCGMIGFGSVFIFHTAPVFVVCVLLLIPMSNSTYSILFASI
RATTNRMDRGLAGSISSTVRALYSGSWALAPGVIGLYLATAQSMTPAYGIAGAASLTCFL
LYFFFAGKTPKSSGPLSDAPGFLPSLKRILQPYILKRIIAMSLLLGLQRLNTMLSPLIIT
HPAGGTVVDVGFMAGLTAFLEMPFMMMWGTLQKRFRNVHILAAGSLIYCLYLTLAGFASA
PWHIYALVGINACGAAAILSVPITYLQDLIADRPGLGSSLISVSVFISNGVAATIFAIGT
TLTDYSGTAQIAAFAGLGAIGFLLFLESSKRQLSAA