Protein Info for ABIE40_RS04490 in Rhizobium sp. OAE497

Annotation: chloride channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 signal peptide" amino acids 16 to 27 (12 residues), see Phobius details amino acids 46 to 46 (1 residues), see Phobius details transmembrane" amino acids 28 to 45 (18 residues), see Phobius details amino acids 64 to 87 (24 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 166 to 190 (25 residues), see Phobius details amino acids 202 to 223 (22 residues), see Phobius details amino acids 239 to 261 (23 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 327 to 353 (27 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 400 to 419 (20 residues), see Phobius details PF00654: Voltage_CLC" amino acids 77 to 416 (340 residues), 288.4 bits, see alignment E=4.2e-90

Best Hits

KEGG orthology group: None (inferred from 92% identity to rlg:Rleg_7107)

Predicted SEED Role

"Chloride channel protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>ABIE40_RS04490 chloride channel protein (Rhizobium sp. OAE497)
MPSSHRNSKLLRRSRVIWGSFSLWRPRLVFWCGALAIGVISVGFAKLADLAQKAFTGLTS
SGEWAFLLPLVLTPFVFMLSAYLAATLFPNSQGSGIPQAIAARHLRDEEDRTRLLSLRIA
FGKIVLTVLGLFSGASIGREGPTVQVGASIMLAVARFGGMAQARGLILAGSAAGIAAAFN
TPLAGIVFAIEEMSRTYESRANGLVLTAVILSGLAALGLAGSYNYFGEASVAPTQLRDWG
LVLVCGIGGGALGAAFSGFALHFGQKIRRWAQPQPLKRMLALAGICGLAIAVIGILSGGT
TFGTGYEQARGAVEGHALPLLFFVEKLAASFLSMISGIPGGIFAPSLAVGAGFGSTVGSL
LGTSVALAAILGMAGYFSGVVQAPMTAFVIILEMTGDHQAVIPIMAVSMIGYVTSRILSR
EPLYHGLSRVFIAAAIRARRAIEKEEVAG