Protein Info for ABIE40_RS04030 in Rhizobium sp. OAE497

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF12852: Cupin_6" amino acids 4 to 185 (182 residues), 143.1 bits, see alignment E=1.3e-45 PF12833: HTH_18" amino acids 224 to 302 (79 residues), 65.1 bits, see alignment E=9e-22 PF00165: HTH_AraC" amino acids 265 to 301 (37 residues), 31.1 bits, see alignment 3e-11

Best Hits

Swiss-Prot: 40% identical to ARACL_STRLI: Putative AraC-like transcription regulator from Streptomyces lividans

KEGG orthology group: None (inferred from 66% identity to rcu:RCOM_1984790)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>ABIE40_RS04030 AraC family transcriptional regulator (Rhizobium sp. OAE497)
MAVDPFSDVLTLSKAEAVVTGGFTAGGPWSIRFPAREKIKFFAVVKGSCWVHLEGAREPL
LFETGDVGLLAKPRVAVLSSDPGLEPVDAMSLFSNVGRNAVAVVGDGGDFGYIGGHVMLD
PIRGKLLADILPPWILTRAASPHAAAFRWLLDRLIEERTSGRPGSQLASSQLTQLLFIEI
LRSHLGTARLMPAGWLRALAEPRIAPALRLMHGDPARSWHLEELAKACAMSRTSFAFHFR
TVAGVAPLTYLATWRMHLAERSLRDERTAVATVARSLGYTSESAFSNAFKRANGKSPSAY
RASVSGLDKTVPEQTNNAAPASETAF