Protein Info for ABIE40_RS03450 in Rhizobium sp. OAE497

Annotation: DHA2 family efflux MFS transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 40 to 62 (23 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 218 to 237 (20 residues), see Phobius details amino acids 258 to 283 (26 residues), see Phobius details amino acids 285 to 286 (2 residues), see Phobius details amino acids 291 to 312 (22 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details amino acids 349 to 374 (26 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details amino acids 426 to 443 (18 residues), see Phobius details TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 8 to 410 (403 residues), 237.6 bits, see alignment E=1.3e-74 PF07690: MFS_1" amino acids 9 to 400 (392 residues), 161.6 bits, see alignment E=1.3e-51 amino acids 274 to 445 (172 residues), 34.1 bits, see alignment E=7.7e-13

Best Hits

KEGG orthology group: None (inferred from 85% identity to rle:RL0845)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (474 amino acids)

>ABIE40_RS03450 DHA2 family efflux MFS transporter permease subunit (Rhizobium sp. OAE497)
MNRIVPLILAVALFMEQMDSTVIATALPAIANDLHVNPITLKLALTSYMVSLAVFIPISG
WMADRFGAKNIFRLAICVFVVGSIFCAFSSNLVEFVIARFLQGMGGSMMTPVGRLVLVRT
TQRSDLVSAMALLTIPALVGPLAGPPLGGFITTYFSWHWIFLINVPVGVVGVWLATIFLP
HVEATRPPKLDFIGFILTSVSAAGVVFGLSVVSLPALPPIIGIAATVIGLICGWLYVRHA
KSHPAPILNLDLFKNATFRASTTGGTLFRICVGAMPFLTPLMLQLGFGLTPFQSGLITFS
GAIGAITTKFMARRVFAAVGFRSTLLTAACVTTVVTAATGFFTPETPHLAIVMILLIGGF
SRSFIFTGINALAFADIKDSEASQATSMSSVLQQISLALGVSVAAMILETCIYFRGEALQ
VADFHMAFYVIAALTIIAMIPFIRMDKNAGALVSGHRGKRVAPAVMEAEQPAVK