Protein Info for ABIE40_RS02935 in Rhizobium sp. OAE497

Annotation: flagellar motor switch protein FliG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 PF14842: FliG_N" amino acids 16 to 110 (95 residues), 55.6 bits, see alignment E=1.4e-18 PF14841: FliG_M" amino acids 128 to 200 (73 residues), 70.5 bits, see alignment E=2.3e-23 PF01706: FliG_C" amino acids 228 to 335 (108 residues), 76.7 bits, see alignment E=3.4e-25

Best Hits

Swiss-Prot: 77% identical to FLIG_AGRFC: Flagellar motor switch protein FliG (fliG) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02410, flagellar motor switch protein FliG (inferred from 86% identity to rec:RHECIAT_CH0000728)

Predicted SEED Role

"Flagellar motor switch protein FliG" in subsystem Bacterial Chemotaxis or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (346 amino acids)

>ABIE40_RS02935 flagellar motor switch protein FliG (Rhizobium sp. OAE497)
MMDFDDFSGAIAGKPLTQAEKAAAVLLAMGKGVAGRLLKYFTQAELQTIISSAQALRAIP
PDELLGLVAEFEDLFTEGAGLMDNAKAIESILEEGLTPDEVDSLLGRRTAFQAYETSIWD
RLGEGDPAFIGKFLLREHPQTIAYILSMMPSSFGAKVLMQLPDSRRADIMNRTVNLKSVS
PKAAQIIEKQVMTLLAEIDAEKNSSGSNKVAELMNEMDKPQVDTLLTSLESISREAVNKV
RPKIFLFEDLLLMPQRSRVMLLNDISADILTMALRGASAEIRESVLASISPRQRRMIESD
LQSGTTGINPREIAIARRAVAQEAIRLANSGQIQLKETEGEPAAAA