Protein Info for ABIE40_RS02775 in Rhizobium sp. OAE497

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 47 to 64 (18 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 164 to 181 (18 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 223 to 247 (25 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 278 to 294 (17 residues), see Phobius details PF00892: EamA" amino acids 19 to 148 (130 residues), 48.6 bits, see alignment E=4.8e-17 amino acids 162 to 294 (133 residues), 70.2 bits, see alignment E=1e-23

Best Hits

KEGG orthology group: None (inferred from 80% identity to rle:RL0671)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>ABIE40_RS02775 DMT family transporter (Rhizobium sp. OAE497)
MSQAAAPSVETAPSQRFALTALILGGAAIGGSPIFVRLSEVGPMATAFWRVALALIPIFI
FSLIKKDSGPKPEKLSDYAMLILPGVILAADLAAWHLSITMTSVANATLLANLAPVFVTV
IGFIFFRAPVSRIFVMGLALALVGVIVLKGGPSAFGNGDLRGDGVAIIAAVFYAGYILAI
GQLRSRFDTVRIMLWSTASAAVCVFPLGFFFEPQMLPPTAYGWAIVFGLAFVSHASGQVA
IAFALAYLPAAFSSLTLLLQPVVAAILAWVLLNEAIGPMQALGGLVVLAGIMIARRG