Protein Info for ABIE40_RS02765 in Rhizobium sp. OAE497

Annotation: TIGR03862 family flavoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF03486: HI0933_like" amino acids 5 to 394 (390 residues), 345.2 bits, see alignment E=1.2e-106 PF07992: Pyr_redox_2" amino acids 5 to 167 (163 residues), 31.1 bits, see alignment E=4.4e-11 TIGR00275: flavoprotein, HI0933 family" amino acids 6 to 393 (388 residues), 279.3 bits, see alignment E=4.9e-87 PF13450: NAD_binding_8" amino acids 8 to 37 (30 residues), 22.4 bits, see alignment (E = 3e-08) TIGR03862: flavoprotein, TIGR03862 family" amino acids 27 to 401 (375 residues), 524.3 bits, see alignment E=1.6e-161

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 74% identity to sme:SM_b20319)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>ABIE40_RS02765 TIGR03862 family flavoprotein (Rhizobium sp. OAE497)
MKKKQIAIIGGGPAGLMAAETLAGSGHAITIYDAMPTLARKFLLAGKSGLNITHSEDYER
FAARFGGASARLRPALDQLTPADIREWAAALGTETFVGSSGRVFPTVMKASPLLRAWIAR
LESQGVAIAKRHRWTGFDGNAYVFETPEGSKTIEADAALLALGGASWPKLGSNAAWVPWL
RHRGVEIAPFRPANCGFDVDWSAIFRDRFAGAPLKAVTATSAAGTLPGEFVISRHGIEGS
LVYAHAAALRDELDGKGTASLIVDLAPGRPLERIAADLARQDRKASLSNRLRKGAGLDAV
KAALVRELAQQDALQDPQRLAGQIKALPIPLTATRPIAEAISSAGGISFDAIDDGYMLKA
LPGLFAAGEMLNWEAPTGGYLLTACMATGKAAAAGMRAWLEKTA