Protein Info for ABIE40_RS01695 in Rhizobium sp. OAE497

Annotation: rRNA maturation RNase YbeY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 PF02130: YbeY" amino acids 20 to 155 (136 residues), 129.3 bits, see alignment E=4.2e-42 TIGR00043: rRNA maturation RNase YbeY" amino acids 50 to 157 (108 residues), 127 bits, see alignment E=1.7e-41

Best Hits

Swiss-Prot: 78% identical to YBEY_RHIL3: Endoribonuclease YbeY (ybeY) from Rhizobium leguminosarum bv. viciae (strain 3841)

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 78% identity to rle:RL0393)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (171 amino acids)

>ABIE40_RS01695 rRNA maturation RNase YbeY (Rhizobium sp. OAE497)
MTLLDIQISVEEGGWPSEDELQPLAERVLEAAAGHLKTHAKQKFPKMATELSLVFTDDES
IRAINAEWRQKDKATNVLSFPAYPITPGKMPGPMLGDIIIARETVEREAAELEKPFDNHL
THLMVHGFLHLFGYDHMNNAEAEIMEGLETRILADLGLSDPYEGQDLKLEP