Protein Info for ABIE40_RS01560 in Rhizobium sp. OAE497

Annotation: DUF917 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF06032: DUF917" amino acids 9 to 145 (137 residues), 55.8 bits, see alignment E=6e-19 PF20906: DUF917_C" amino acids 176 to 330 (155 residues), 72.9 bits, see alignment E=2.2e-24

Best Hits

KEGG orthology group: K09703, hypothetical protein (inferred from 91% identity to rlg:Rleg_4633)

Predicted SEED Role

"Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>ABIE40_RS01560 DUF917 family protein (Rhizobium sp. OAE497)
MGRILVEKDVEAAVKGGSVYAAGGGGWADHGRMLGYAAVNVGKPELVSIDELKDDDWIAT
AAAIGAPASTTPWEMQGIDYVKAVQLLQDELGDRLSGLIIGQNGKSSTLNGWLPSAILGT
KVVDAVGDIRAHPTGDMGSIGMAGSPEQMIQTAVGGNRAENRYIELVVKGATAKISPILR
AASDQSGGFIASCRNPLRASYVRKNAALGGISMALALGEAIIAAEKKGGSAVIDAICKTT
GGHILTEGIITKKDVVYTNEAFDIGTVSVGAGDNAVTLHVMNEYMAVDDADGKRVATFPS
VITTLSPEGEPLSVGQLQTGMHIFILHVPMDIIPLSASVLDPTVYPPVEKAMGIEIARYA
LGALA