Protein Info for ABID97_RS29480 in Variovorax sp. OAS795

Annotation: helix-turn-helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 PF14525: AraC_binding_2" amino acids 25 to 194 (170 residues), 99.5 bits, see alignment E=3e-32 PF12833: HTH_18" amino acids 233 to 314 (82 residues), 64.3 bits, see alignment E=1.6e-21 PF00165: HTH_AraC" amino acids 278 to 312 (35 residues), 39.3 bits, see alignment 7.7e-14

Best Hits

KEGG orthology group: None (inferred from 52% identity to bmn:BMA10247_2709)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (327 amino acids)

>ABID97_RS29480 helix-turn-helix domain-containing protein (Variovorax sp. OAS795)
MNAHHFSTLIEHPSDRQAWWGRINTSYFGALRVQCLDTGSFDARMDAYELGPLGMFMIEA
PSHRVARPDTRHEIALDEHYKLVLQLEGHGHISQHDREFHLHPGDWSLYDPRVPYAITNP
ERSRLLAITIPRQQFKGMKIPDLHTCEAHTPAMQGLYAVLGSFLTSLADQLPSLPNAVGR
SVSDTVLGLLASTLATHSDEQFGAHPVPGVLKARVKQFVHAHLADPALSLDLIAQQLRCS
KRYLHRVFEDEDQTLDRFIWQMRLERCSEALRSAGGRRISVSEIAFAWGFNSSAHFCRVF
KAQYGVAPREFQRREAERALASASLTH