Protein Info for ABID97_RS29460 in Variovorax sp. OAS795

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 34 to 55 (22 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 184 to 210 (27 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 9 to 280 (272 residues), 102 bits, see alignment E=1.7e-33

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 68% identity to bpd:BURPS668_0056)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>ABID97_RS29460 branched-chain amino acid ABC transporter permease (Variovorax sp. OAS795)
MEDYLPFVISGLGLGAVYALSGVGLVVLYRSSGVLNFAFGAIGAIGAYVAWSMLGADWPQ
GLAWCAAIVTSMLLSLAYGRLLAPRLSHRDPTIRSIATLGFALVVVGFTEWYWGEQPRRL
VLPTDAGAIEFVLGEVEVRLTHTRALGLALAVIMMGGVGLLLSKTRVGLKMRALANDRDL
SALLGIRVLGVDTVAWVLSGAFAGVCGLLLANIVRLQATLLTFLVIPAFAAAIIGRLHSL
PATVAGGIAIGVLEALAITVPGFAAFRTATPFLIALAMIVFYRSGTRPA