Protein Info for ABID97_RS29210 in Variovorax sp. OAS795

Annotation: TerC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 84 to 100 (17 residues), see Phobius details amino acids 121 to 148 (28 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 212 to 230 (19 residues), see Phobius details PF03741: TerC" amino acids 16 to 203 (188 residues), 155.6 bits, see alignment E=6.1e-50

Best Hits

Swiss-Prot: 54% identical to YGDQ_ECOLI: UPF0053 inner membrane protein YgdQ (ygdQ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 95% identity to vap:Vapar_5729)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (249 amino acids)

>ABID97_RS29210 TerC family protein (Variovorax sp. OAS795)
MLELLTDPQVWIAFATLTALELVLGIDNIIFISILVDKLPPARRELARRVGLFMAMFMRI
GLLLVLAWIVGLVSPLFSVLGKDISGRDLILILGGLFLIWKSTSEVHQSLEGGHEQKANP
VTATFASVILQIMVIDLVFSLDSIITAVGMVDDVRVMIAAVIVSVFLMMLFAGPIGRFVS
NHPTIKMLALAFLVVVGVVLVAEGFGHHVPKGYVYFAMAFSLGVEMLNIRLRKKSTKAVE
LRPPHIPGD