Protein Info for ABID97_RS28740 in Variovorax sp. OAS795
Annotation: NADH:flavin oxidoreductase/NADH oxidase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 44% identical to AFVA_ASPFN: NADPH dehydrogenase afvA (afvA) from Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
KEGG orthology group: None (inferred from 79% identity to cti:RALTA_B1042)Predicted SEED Role
"NADH:flavin oxidoreductases, Old Yellow Enzyme family"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (371 amino acids)
>ABID97_RS28740 NADH:flavin oxidoreductase/NADH oxidase (Variovorax sp. OAS795) MSRLFEPWSLDGLALPNRIVIAPMCQYSADEGCATDWHMIHLGHLALSGAGLLILEATAV SATGRISPQDLGLYADANESALRRVLDAVRAHSPMALAVQLSHAGRKGSSRAPWEGGVQI RPGEPGGWKTEAPSAVPHAEGEDAPMALDCDGLRRVRDEFVVATRRAARLGLDGIEVHGA HGYLLHQFLSPIANHRADEYGGSLENRMRFPLEVFDAVRAEFPADKPVWMRVSATDWVPG GWDIEGTLALAHALKARGSAAVHVSTGGVSPQQAIKLGPGYQVPYAQRVKAEVGLPTIAV GLITEAEQAESIVANGEADAVSLARAMLYDPRWPWHAAAKLGAHVFAPRQYWRSQPREYQ DLFEGAAFGQR