Protein Info for ABID97_RS28715 in Variovorax sp. OAS795

Annotation: aldehyde dehydrogenase iron-sulfur subunit PaoA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF00111: Fer2" amino acids 53 to 100 (48 residues), 38.2 bits, see alignment 1.1e-13 PF01799: Fer2_2" amino acids 120 to 207 (88 residues), 99.5 bits, see alignment E=9.3e-33

Best Hits

Swiss-Prot: 64% identical to PAOA_ECO57: Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA (paoA) from Escherichia coli O157:H7

KEGG orthology group: K13483, xanthine dehydrogenase YagT iron-sulfur-binding subunit (inferred from 87% identity to vap:Vapar_5490)

MetaCyc: 63% identical to aldehyde dehydrogenase, Fe-S subunit (Escherichia coli K-12 substr. MG1655)
Carboxylate reductase. [EC: 1.2.99.6]; 1.2.98.- [EC: 1.2.99.6]; 1.2.98.- [EC: 1.2.99.6]

Predicted SEED Role

"Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT"

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.99.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>ABID97_RS28715 aldehyde dehydrogenase iron-sulfur subunit PaoA (Variovorax sp. OAS795)
MDSPTNPLISRRGALIVGAATAAAVSSSAPAAAAQAAPAASASAIPRARLSLNVNGQTHA
LELDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVIADGRRINACLSLAVMHDGGQVTT
IEGLGTPQNMHPLQAAFVKHDGYQCGYCTPGQICSAVAVLDEIKRGVPSHASADLTARPL
LSADELRERMSGNICRCGAYSNIVDAITEVAGSRT