Protein Info for ABID97_RS28255 in Variovorax sp. OAS795

Annotation: long-chain-fatty-acid--CoA ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 PF00501: AMP-binding" amino acids 34 to 415 (382 residues), 315.3 bits, see alignment E=5.3e-98 PF13193: AMP-binding_C" amino acids 469 to 546 (78 residues), 77.1 bits, see alignment E=1.7e-25

Best Hits

KEGG orthology group: None (inferred from 91% identity to vap:Vapar_5773)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (564 amino acids)

>ABID97_RS28255 long-chain-fatty-acid--CoA ligase (Variovorax sp. OAS795)
MSATAGQPPHFRFWPKGVARHLRVPRARLPDYLDTAARRYPDKPAIAYCGTTLAYARLRE
RVDALAAYLQQRLGVAPGDRVLLASQNCPQFVTAFYAVLRAGGVVVPVNPMSKAAEVRHH
ALDSGARVACVAQDLLAALTLGEGDGELRAVLVHAYADAVDASVGDDVLPEWVTAPRAPL
DDARLHGFEQAIAPGLVPADLPLSPDDLAVLPYTSGTTGHPKGCMHTHATLLASLASSAV
WKQLHVETVTLAVAPLFHMLGLQNGMNLPMFLGATAVMMPRWDPAMAARLIERHAVTAWS
APPAMVIDLFSHPEADQRDLSSLALLSGGGAAMPEAVAAMLQQRHGLSYNEGYGLTETAS
FLHANPPARGKRQCLGMPTQGVDSRIVDPVTFEELPPGETGELVTRGAQVMKGYWRNPEA
DREAFIEIGGQRFFRTGDLASMDEEGYFFLRDRLKRMINASGYKVWPTEVENAMYEHPAI
HEACVIAVPDGKRGESVKALVVLKPAQRGLVGEEEIVAWCRERMAVYKAPRVVEFLDRLP
KSGTGKILWRELQEAHRAAAQEPT