Protein Info for ABID97_RS28175 in Variovorax sp. OAS795

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 606 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 296 to 317 (22 residues), see Phobius details PF07730: HisKA_3" amino acids 405 to 469 (65 residues), 51.3 bits, see alignment E=1.4e-17 PF02518: HATPase_c" amino acids 514 to 598 (85 residues), 33 bits, see alignment E=7.2e-12

Best Hits

KEGG orthology group: None (inferred from 91% identity to vap:Vapar_5558)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (606 amino acids)

>ABID97_RS28175 histidine kinase (Variovorax sp. OAS795)
MNLARRIDPRRSMAAAIGWLLIALTLCLALAANLWLRSFVRTTLLEQHGQRLEAAAEHVN
AELDTALLLRLQAVSVVATMLSEDVQDSQGERLKRSLQAVRRGVPDLIWLAVTDADGFIV
AATDEQVVGQNVNQHAWISQGLDAAWIEDGRSPNERFLKLTAPVSNADGAIIGVVAANLS
WNWVQKMVGEIRASPGEWLLVDRDGIVRHGPGALLGKRWQDLGEPVTPFDPTVAGLGTDG
SDLPTRIRTRRLLDNRPYLIATPPNARDGTLRRLGWHAVVIQPVESVAAFATAIEWRISI
VLSLLGLAAAAAGVVVAHRLTRRVSVIAHSADAVLAGSATRIEVPQGVDEAARLGSALDR
LLDTLQRERDELRQLNAELDERVRQRTEEINRLAKESRDAAVVRERLRLARGLHDTLAHS
MMAMLTEIRVLKRLASSRPDALPDELVRAEQAARDGLDEARRAIEQLRSNPVRDIGLGAA
LAELAKSLGERSGIELDARIDPELSALAAEPAETVFHMCEEVLRNVERHAGAARLLVRLQ
RAADGGVELEIADDGIGFDPGAEAAGHYGLVGLREQAEAIGARLRIESRRGEGTRVSLGW
SHAGAA