Protein Info for ABID97_RS27735 in Variovorax sp. OAS795

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 177 to 207 (31 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 85 to 256 (172 residues), 78.5 bits, see alignment E=2.8e-26

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 91% identity to vpe:Varpa_2476)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (265 amino acids)

>ABID97_RS27735 ABC transporter permease (Variovorax sp. OAS795)
MPGFFDGNLRRAAWRIAALLVCVLAWHLATRGRVNLGLVTFQNVPAPREVAESAWALLQS
PLVLQHLGASLRRVFIGFGLAAIAGVVLGLAIGRARWAEDTLLPPLEVLRPIPAVAWIPL
AILMFPSSEASMVFITFVGALFPVLLNTVHGVEAVDARLVASARSLGAGRIAVFREVILP
GALPSVVTGLAIGMGTAWFCLVTAEMISGQFGIGYYTWMSYTIQNYADIVVGMLFIGVLG
MGSSALVRRIGQALMPWRAVQEKRK