Protein Info for ABID97_RS27685 in Variovorax sp. OAS795

Annotation: L,D-transpeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF01471: PG_binding_1" amino acids 58 to 113 (56 residues), 49 bits, see alignment E=5.7e-17 PF03734: YkuD" amino acids 205 to 336 (132 residues), 67.9 bits, see alignment E=1.4e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>ABID97_RS27685 L,D-transpeptidase family protein (Variovorax sp. OAS795)
MFRNAACLAVSATGATSWLAHAGAKSDPKNRSGASGPAALDRLNAADETPVLAQGSHGAA
VMRAQILLDRAWFSPGEIDGGFGANMRRVVKAYQQSNGLAQSGKVDAATWTSLKADTAPL
FALYAITEKDAAGPFAATPRAMADRAKMKTSGYENLKEALSEKHHMSPKALLALNAGARF
EAREEIVVVNITSTADASVVKAAASIEIDKSDHMLFVLDGSGKPLAGFPISIGGPLDPLP
LGRMKIINEVKDPTFTYDPAILKKAPAGAAKVDVAAGPNNPIGNVWMGLSKPHWGIHGTP
APERVGTATTNGCIHLTNWDAARLSQLAKAGFAVEVKA