Protein Info for ABID97_RS27630 in Variovorax sp. OAS795

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 PF08448: PAS_4" amino acids 22 to 129 (108 residues), 45.5 bits, see alignment E=1.6e-15 TIGR00229: PAS domain S-box protein" amino acids 29 to 128 (100 residues), 23.7 bits, see alignment E=2.2e-09 PF13426: PAS_9" amino acids 30 to 128 (99 residues), 30.7 bits, see alignment E=6.2e-11 PF12833: HTH_18" amino acids 163 to 239 (77 residues), 69.2 bits, see alignment E=6.1e-23

Best Hits

KEGG orthology group: None (inferred from 44% identity to bur:Bcep18194_B0341)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>ABID97_RS27630 AraC family transcriptional regulator (Variovorax sp. OAS795)
MRIEPQTLDWLARTPGLVEELFDGLPNVLFYIKDTEGRYLWVNKTLIERSGLGGVSDVIG
KTADQLFPVTGSSTLAQDIDVIRTGHPIRELLRLYRTYKGERYWCLSSKFPLLDGATRVA
GLAGLSRDLPRPNERHRSYHRLAKFLDYIDQRLDQPVRIADAAEHASVSIDTLGRLVFEV
FHITPKQLLMKKRIDKACQLLDETSLSITDISGACGYSDHSAFTRQFRVATLMTPAQFRL
SLSHRVNSKELRG