Protein Info for ABID97_RS27055 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 19 to 41 (23 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 224 to 243 (20 residues), see Phobius details amino acids 249 to 251 (3 residues), see Phobius details amino acids 255 to 278 (24 residues), see Phobius details amino acids 290 to 308 (19 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 345 to 370 (26 residues), see Phobius details amino acids 377 to 398 (22 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 364 (341 residues), 168.2 bits, see alignment E=2.5e-53 amino acids 274 to 406 (133 residues), 66.1 bits, see alignment E=2.8e-22 PF06779: MFS_4" amino acids 29 to 390 (362 residues), 27.8 bits, see alignment E=1.7e-10

Best Hits

KEGG orthology group: None (inferred from 88% identity to vap:Vapar_6311)

Predicted SEED Role

"Oxalate/formate antiporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>ABID97_RS27055 MFS transporter (Variovorax sp. OAS795)
MNMPAAHGSANGTDHNWSIVAAGALMTCVAIGVVFSLAVFLEPMSAATGWSRAGISSAMT
FAFLSMGVAGFAWGALSDRYGPRLVVLAGTVLLGLSTVLASRATSLVEFQLLFGVMMGIA
AGSFFAPVISTTASWFERHRSLAVSLVSAGMGVAPMTIAPLAAWLVTRYDWRTAQLIIGI
GAWIVLLPAVWFIRAAPGTAPAASPGDAKPAEPMPVGKALRSRAFLVLGATFFACCAAHS
GPIFHTVSYAIGCGLPTFAAVTIYSMEGAAGLGGRLLFGVMADRLGAKRVLVAGLLIQAL
AAASYLLVDRLAGFYAVAVVFGLAYGGVMPLYAVLARDYFGARILGTVLGAATMLSSLGM
ALGPVLGGWLFDRYGSYAWMYIGSMAVGLGAVAIALAFPRTDRVRNDAGPRVPASA