Protein Info for ABID97_RS26385 in Variovorax sp. OAS795

Annotation: cupin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 118 PF05899: Cupin_3" amino acids 47 to 113 (67 residues), 69.4 bits, see alignment E=8.6e-24

Best Hits

KEGG orthology group: K06995, (no description) (inferred from 75% identity to rsl:RPSI07_mp1052)

Predicted SEED Role

"protein of unknown function DUF861, cupin_3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (118 amino acids)

>ABID97_RS26385 cupin domain-containing protein (Variovorax sp. OAS795)
MSGITVLKQSATIGGLQDQGTPARPLTLPPCRLRGIDVELAGAGGNGSGIWECEPGRFER
QLPNAEVMHILTGAGTFTPTGETPLSFRAGDTLFFPANTTGEWHVLETLRKVFVVMAM