Protein Info for ABID97_RS26130 in Variovorax sp. OAS795

Annotation: amino acid ABC transporter permease/ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 51 to 73 (23 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 181 to 207 (27 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 10 to 107 (98 residues), 82.5 bits, see alignment E=1.3e-27 PF00528: BPD_transp_1" amino acids 31 to 212 (182 residues), 60.1 bits, see alignment E=3.8e-20 PF00005: ABC_tran" amino acids 298 to 455 (158 residues), 126 bits, see alignment E=2.7e-40 PF13304: AAA_21" amino acids 424 to 487 (64 residues), 31.5 bits, see alignment E=2.7e-11

Best Hits

KEGG orthology group: K02028, polar amino acid transport system ATP-binding protein [EC: 3.6.3.21] K02029, polar amino acid transport system permease protein (inferred from 70% identity to bra:BRADO1538)

Predicted SEED Role

"FIG00442713: hypothetical protein"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.21

Use Curated BLAST to search for 3.6.3.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (548 amino acids)

>ABID97_RS26130 amino acid ABC transporter permease/ATP-binding protein (Variovorax sp. OAS795)
MDLFLHYLSMPYLIQGIVFTLAATGIGLAGGMVVGLLLAAMQLSRFKPLAAFARGYAVIF
RGTPLALQMIFVYNALPHVGIVLPGLLAAGVALAFNEATFIAEMFRSGVVGVERGQVVAG
QALGMTPRVLMRRIVAPQALRSMIPAMGNEAVSTLKNSSLASVIAVQELTLRSSQLASST
FDFFSVFFASGLIYLVLTGAISLVQLALEARFDLDRPAAPRGLARWLPWQRAAAPVRAQE
AAAPDMHAAASDNAAPVTTPASGMPAPERAARAARLAAAPVALRIGGVSKAYGQQPVLRD
LSLTVQAGEVVALLGPSGSGKSTLLRCINHLESWDAGQIHVGGHRLGFRPDGQLMNPSDL
ARERGRLGVGMLFQQFNLFAHLTARENVAGPLRWVHGWTAEDADRRARELLARVGLAHRV
DALPRHLSGGQQQRVAIARALAPGPSVLLLDEPTSALDPELVNEVLEVIRRLAVEEGLTM
VISTHQLRFAAEVADRVVFLSGGRIVESGPALEVLQHPRHRETARFLNVMSADVLPVGSP
PMPMPVPA