Protein Info for ABID97_RS26070 in Variovorax sp. OAS795

Annotation: TRAP transporter large permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 47 to 68 (22 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 139 to 163 (25 residues), see Phobius details amino acids 170 to 192 (23 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 240 to 256 (17 residues), see Phobius details amino acids 268 to 293 (26 residues), see Phobius details amino acids 312 to 330 (19 residues), see Phobius details amino acids 336 to 384 (49 residues), see Phobius details amino acids 396 to 419 (24 residues), see Phobius details PF06808: DctM" amino acids 7 to 416 (410 residues), 401.4 bits, see alignment E=4.4e-124 TIGR00786: TRAP transporter, DctM subunit" amino acids 17 to 419 (403 residues), 478.3 bits, see alignment E=8.8e-148 PF03600: CitMHS" amino acids 245 to 411 (167 residues), 32.1 bits, see alignment E=6.7e-12

Best Hits

Swiss-Prot: 57% identical to YIAN_ECOLI: 2,3-diketo-L-gulonate TRAP transporter large permease protein YiaN (yiaN) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 86% identity to vpe:Varpa_0715)

MetaCyc: 57% identical to 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-235

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>ABID97_RS26070 TRAP transporter large permease subunit (Variovorax sp. OAS795)
MTIFIFIGSLLAAMALGIPIAFALLASGVALMWHLQLFDAQILAQNLVGGADSFPLLAVP
FFMLAGEIMNVGGLSRRIVDLALALVGHVKGGLGYVTIMAGCLLSALSGSAVADAAALTA
LLLPMMVKAGHNKVRAGGLIASVGVIGPVIPPSIGLVIFGVAANVSISKLFLAAIVPGLL
IGGALWVTWAWLVRREDIVPPPRKSATEIMKAFRDATWALVLPVIILVGLRMGVFTPTEA
AVVAAVYALFVSTVIYRELKLPQLYGVFVASAKTSAVVMFLIAAAMVSAWLITVANLPRM
VVDLLKPFMDSPILLMAAIMLLVMAVGTAMDMTPTILILTPVLMPVVKAAGIDPVYFGVL
FIINNSIGLVTPPVGTVLNVVAGVGKISMDDVTKGVIPFMIAEFAVMFLMVVFPKLVTVP
AGWFY