Protein Info for ABID97_RS26065 in Variovorax sp. OAS795

Annotation: TRAP transporter small permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details PF04290: DctQ" amino acids 23 to 151 (129 residues), 98.8 bits, see alignment E=1.2e-32

Best Hits

KEGG orthology group: None (inferred from 66% identity to vpe:Varpa_0716)

Predicted SEED Role

"TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>ABID97_RS26065 TRAP transporter small permease (Variovorax sp. OAS795)
MGKFVDTVCKGIEFLIALGLAIMVVLVFGNVVLRYGFNSGITVSEELSRWLFIWGTFLGA
LVALREHAHLGIDMVVGRLPVIGKKICLIIGHALMIFIVVLLVMGSWEQVKINLDVTAPT
TGWSMSIVYLSGLVFGVLACGLLLLDLWKVITGQLSDDELVMVQESEEAVQLKQVLDDAR
QPETSAGARP