Protein Info for ABID97_RS26025 in Variovorax sp. OAS795

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00005: ABC_tran
  • amino acids 17 to 166 (150 residues), 109.1 bits, E=2.9e-35

Best Hits

KEGG orthology group: K01996, branched-chain amino acid transport system ATP-binding protein (inferred from 76% identity to rfr:Rfer_1835)

MetaCyc: 34% identical to lipopolysaccharide transport system ATP-binding protein LptB (Helicobacter pylori 26695)
RXN-23614 [EC: 7.5.2.5]

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

MetaCyc Pathways

• Helicobacter pylori 26695 lipopolysaccharide biosynthesis (final steps) (1/2 steps found)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.5

Protein Sequence (240 amino acids)

>ABID97_RS26025 ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MLQVKDLHAGYGPTNVLHGVSLEVPKGKVVSLIGSNGAGKTTTMRAISGMLKPRSGSIKL
EDKEIAGLDSHHIARLGLAHSPEGRRVFSNLSVLDNLRLGAFPRYTGSRPKGDVESDIQS
ALELFPRLKERQQQAAGTLSGGEQQMLAMARAVMLNPDVILLDEPSMGLAPKLVEEVFRI
IRKLRARHVTMLLVEQFAAAALDVSDYAYVLESGRIALEGPAEKLKGDPAVKAAYLGGSH