Protein Info for ABID97_RS26020 in Variovorax sp. OAS795

Annotation: branched-chain amino acid ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 48 (22 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details amino acids 255 to 271 (17 residues), see Phobius details amino acids 277 to 294 (18 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 29 to 277 (249 residues), 128.5 bits, see alignment E=5.4e-41 PF00005: ABC_tran" amino acids 410 to 570 (161 residues), 91.9 bits, see alignment E=1.2e-29 PF12399: BCA_ABC_TP_C" amino acids 618 to 643 (26 residues), 40.3 bits, see alignment (E = 3.8e-14)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein K01998, branched-chain amino acid transport system permease protein (inferred from 61% identity to rfr:Rfer_1836)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (657 amino acids)

>ABID97_RS26020 branched-chain amino acid ABC transporter ATP-binding protein/permease (Variovorax sp. OAS795)
MSIRRASVFTAAVAALAAIPLFTTNPYYIHLLVVIGIYAILLFGMDVVVGYTGEVSLGHA
GLFGIGAYAAGLIFMKLGLPFWVGLIAAIGITAAFGLLLALPALRVTGPYLAMVTLAFGT
ILAILFNEMDFLTSGPQGLVVAKPSIFGIENKGVGFYYFTLAMSALCWIGVTRLLKSHFG
RAFIALRGSPIAADCMGVSVYKYKVVAFVISAAMAGLAGGMFAFSEGYIAPNNFTAELAI
LFLLALTLGGRRSRIGSVLGAAVIVVLPNLLSDIALFRMLAVTLAVVITGYAIYRVASKG
LGLLTAAIPVTIVIGMAVLSFTLTDISERRLTIFGLLILGVVYYMPDGIVGFIRSATKGL
RAKPKKHAVVTTSVVATPSQAIQATTSGWQGAILQAKGVVMQFGGLKAVNQLDMVVEQGA
VHGLIGPNGSGKSTMMNVLTGIYAPTSGDVVFEGNRINGNTPSSIALGGIARTFQNVQLF
GDMSATENILVGLHHTFKSTLLDVVLHTRRYRDEEAAALQRAQALLDFVGLSRDAEEEAR
NLPYGRMRLLEIARALSLGPRLLLLDEPAAGLPPAELPDLVQMIRKIKEHGVAVILIEHH
MDVVMSICDQVTVLDFGQKIAEGTGSEVRSNPKVVEAYLGAEVVHEPKGAGFAPAMA