Protein Info for ABID97_RS25890 in Variovorax sp. OAS795

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 PF00005: ABC_tran" amino acids 20 to 179 (160 residues), 92.7 bits, see alignment E=1.1e-29 amino acids 295 to 446 (152 residues), 106.4 bits, see alignment E=6.7e-34 PF08352: oligo_HPY" amino acids 509 to 530 (22 residues), 17 bits, see alignment (E = 2.1e-06)

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 94% identity to vap:Vapar_5637)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (551 amino acids)

>ABID97_RS25890 ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MGAPLTVQGLRIEAGNSTLVDNLSFSVQPGEVLALIGESGSGKTTTALALMGYARSGCRI
AGGRVQIGDTDVLALDAARQRSLRGRTVSYIAQSAAASFNPSRTIMDQVVEPTVIHGLCK
REEAEAKAVQLFRELALPDPDNIGSRYPHQVSGGQLQRLMAAMALIGDPDLVILDEPTTA
LDVTTQIEVLRAFRRVVRERRATAVYVSHDLAVVAQMADHILVLRNGKMSELNATEQILS
APADDYTKSLLAAARPAVRASGQASGDSALLLEVKELSCGYGPVDAKGQPAKLILEDINL
KLYRGQAIGVIGESGSGKTTLARAVAGLLKPCHGSVMFDGHALKPTLQQRSPEELRRIQI
VFQMADTALNPSQTIWRILARPLQFYKGLRGEALKQRIHELLDLVKLPRTVADRLPGGLS
GGQKQRVNLARALAAEPDLILCDEVTSALDTVVAAAVLDLMAELRRELGVSYLFISHDLH
TVRSVCDEIVVMQHGRKLSQVARADYDRGPHHPYYQLLARSVPELRRGWLDDMDHAAATA
AAAHPTREIHA