Protein Info for ABID97_RS25840 in Variovorax sp. OAS795
Annotation: carbohydrate ABC transporter permease
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 96% identity to vap:Vapar_6267)Predicted SEED Role
"binding-protein-dependent transport systems inner membrane component"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (296 amino acids)
>ABID97_RS25840 carbohydrate ABC transporter permease (Variovorax sp. OAS795) MTSASPALHPPAAAEHRESPASALSRMLRNGGLMAAVVLYTLYSALPFVWIGTMSVRTTS EISANHFAWPETFHWEKFRIAWVDSNFAQYFWNSTLIVVSAVAIVTLLGAAAAHCLARYN FRGNRLVYFILFSSIVFPPQIILISLFQVLVEYNLYNSRLGLMIVYVSLQLPLTVYLLEG FFARIPQDLFDAAKMDGYSDFEIFWRIVLPVGMPAIATTIILNFIQLWNEFLFAVVLLSD QGARTLPIGIRAYMGDYFQDIGMIATGMMIAVIPVVVLYAFFSEKLIQGMTAGAVK