Protein Info for ABID97_RS25835 in Variovorax sp. OAS795

Annotation: sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF00005: ABC_tran" amino acids 22 to 163 (142 residues), 118 bits, see alignment E=9.7e-38 PF17912: OB_MalK" amino acids 237 to 289 (53 residues), 30.9 bits, see alignment 8.4e-11 PF08402: TOBE_2" amino acids 282 to 356 (75 residues), 45.6 bits, see alignment E=1.2e-15 PF03459: TOBE" amino acids 296 to 347 (52 residues), 29.4 bits, see alignment 1.5e-10

Best Hits

KEGG orthology group: K10112, maltose/maltodextrin transport system ATP-binding protein (inferred from 92% identity to vap:Vapar_6268)

Predicted SEED Role

"Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19); Multiple sugar ABC transporter, ATP-binding protein" (EC 3.6.3.19)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.19

Use Curated BLAST to search for 3.6.3.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>ABID97_RS25835 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC (Variovorax sp. OAS795)
MAAVHLENIFKRYKGTAQPAVDDVSLSVQDGEFMVLLGPSGCGKSTTLRMIAGLEAITEG
SLAIDARKVNEVPAKDRDIAMVFQSYALYPHMTVAENLSFGLRRRKVDRGHIAARVKSAA
DILGLNELLARKPAALSGGQRQRVALGRAIVREPKVFLFDEPLSNLDAALRVNTRNELVR
LHHRLGATMIYVTHDQVEAMTMGQRICVMNKGKVAQVGKPLDVYRAPADAFVARFLGNPP
MNILKARIAQGQPSPVATLAGSELPLARWARAALPPAGDLLVGVRPEELQLHEWREDRNT
LRGVVSAVEPLGAETLLMVALEGDAGEVMARLHRDVRGSIGDRVGLTIPDRALYLFDALT
EKAIPAADVGAP