Protein Info for ABID97_RS25740 in Variovorax sp. OAS795

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 PF00005: ABC_tran" amino acids 42 to 206 (165 residues), 91 bits, see alignment E=1.1e-29 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 255 to 344 (90 residues), 74.4 bits, see alignment E=3.1e-25 PF08352: oligo_HPY" amino acids 257 to 321 (65 residues), 58 bits, see alignment E=9.8e-20

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 59% identity to tsc:TSC_c19690)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>ABID97_RS25740 ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MNRFEPIPVQHAETAVEAEHILDVRDLNVSFRTSAATVHAVRDVSFSVRRGETLALVGET
SSGKSVTCLGLLGLTPPAPYCTITGSARLMARDGIAYELVGSPERVMRRVRGGVASVIFQ
EPMTSLNPVHTVGAQICESLRIHLGMSGRAGTDRAAELLDQVGISDPKRRLANYPHELSG
GMRQRVMIAMAIACEPSLLIADEPTTALDVTIQAQILELLQKLQSETRMAMIFITHNLGT
VAEIADRVMVMYAGRIVEQAGVVELFTEPRHPYSRGLIHSVPRLHSNRARKTPLFAIPGN
VPDPSSHPPGCTFGPRCRHFEPGRCDASVPNLDNARPGHLVRCVRWPEIEGVA