Protein Info for ABID97_RS25080 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 transmembrane" amino acids 25 to 50 (26 residues), see Phobius details amino acids 62 to 85 (24 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 200 to 220 (21 residues), see Phobius details amino acids 252 to 270 (19 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details amino acids 320 to 339 (20 residues), see Phobius details amino acids 465 to 489 (25 residues), see Phobius details amino acids 509 to 528 (20 residues), see Phobius details amino acids 534 to 552 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 27 to 242 (216 residues), 99.2 bits, see alignment E=2.8e-32 PF07690: MFS_1" amino acids 31 to 336 (306 residues), 92.4 bits, see alignment E=2.9e-30

Best Hits

KEGG orthology group: None (inferred from 96% identity to vap:Vapar_4706)

Predicted SEED Role

"putative sugar transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (564 amino acids)

>ABID97_RS25080 MFS transporter (Variovorax sp. OAS795)
MAATLDSRGMPHPAPRPMSAEEKKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFSGLDA
GAAFIFALLAFAAGFLVRPFGAIVFGRLGDMIGRKYTFLVTILIMGLSTFIVGLLPSYAT
IGVAAPVILIALRMLQGLALGGEYGGAATYVAEHSPHGKRGAYTSWIQTTATLGLFLSLL
VILGVRTWLGEQAFGEWGWRVPFLVSIALLGISVWIRLSLSESPAFQKMKAEGKTSKAPL
SESFGEWKNLKIVILALVGLTAGQAVVWYSGQFYALFFLTQQLKVDATTANLMIAAALLL
GTPFFVVFGTLSDKIGRKPIIMAGCLLAVVTYFPVFKMLTEAANPDLAKAQATAGVTVTA
DPATCSFQGNPVAREIDFRSSCDIAKRYLVQNSVSYENVAGAPGSKAVVKIGTKAIEAPV
GNVVNLKFDENSAKEIAAFKKGVAEDLKVAGYPPKADPAKINKVLTILLLFWLVLLVTMV
YGPIAAMLVELFPTRIRYTSMSLPYHIGNGWFGGLLPTTAFAIVASTGNMYNGLWYPIII
AGITLVVGTLFIRETKDVDIYAND