Protein Info for ABID97_RS25065 in Variovorax sp. OAS795

Annotation: excinuclease ABC subunit UvrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1947 TIGR00630: excinuclease ABC subunit A" amino acids 6 to 996 (991 residues), 934.3 bits, see alignment E=4.5e-285 PF17760: UvrA_inter" amino acids 134 to 234 (101 residues), 32 bits, see alignment 1.4e-10 amino acids 1169 to 1274 (106 residues), 88.2 bits, see alignment 4.9e-28 PF17755: UvrA_DNA-bind" amino acids 291 to 359 (69 residues), 37.5 bits, see alignment (E = 3.5e-12)

Best Hits

Predicted SEED Role

"Excinuclease ABC subunit A, dimeric form" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1947 amino acids)

>ABID97_RS25065 excinuclease ABC subunit UvrA (Variovorax sp. OAS795)
MTQGSIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAQL
FDRETALLVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPAGTSAEEVTQWLSASGFT
RVQSEREVATPTGPRKVLDVVADRFRISSAERSRVVEAIEVALKRGSGRVTVHATGAEEN
ASTDVWKFSTGLHCPESDIRYIDPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVIPNDK
LTLRAGAIKTIQTPAWKEAQDDLMRHAEAAGIPRDTPWNKLTDEQKHWVIEGTPNYKEGN
WNKQWYGVRRFFGYLESKAYKMHIRVLLSKYRSYTPCPVCSGARLKLDSLLWRIGSKEDA
DAVLDPAKRFMPTGVKWTRAQLEALPGLCLHDLMLLPIERLRRFFDRMTPSPSGGGQGWG
QAASVKAVAVAEAASPHPHLPPEGEGARSGEAQALKLLFEEITTRLRYLHDVGIGYLTLD
RQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMNRITEAMLRLRDAGNTL
VVVEHDPAVMLAADRVIDMGPGPGIRGGQIVFDGTTDQLRDADTLTGQYLGGRKKIGMGF
KRLVSENTHRLILEGVREHNLRNITVDFPLARLVCVTGVSGSGKSTLIQDVLAPALMRHF
GKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFATAALSRQ
RGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGKRYRPEILEVRVERK
GKGYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDVGLDYVKLGQPVPTLSGGEAQRLK
LAGFLAEAAKSATASRQSVARKGTLFLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVI
EHNLDVIRASDWCIDLGPEGGEGGGMVVAEGTPEQLRENRASLTGAALADYELAIGPEAY
KVAERAARRYIANAKTAPGGNAIEIVNAREHNLKNLSVNIPRGKFSVVTGVSGSGKSTLA
FDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTT
TEVWHFLRLLYVKLGIQHCTHDGAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGV
YTELADWARPRGFTHLRVDGEFLPTTGFPRLDRFKEHSIELPVASLDVLPSEETPLREAL
TKALEHGKGVVHVLSQLDGLKAAMMAGVSAHGIGRVNVFSTLRACPVCSTSYAELDPRLF
SYNSKHGWCPDCVGTGVKLSKDQRKVFDDSIRDDDSKGREQTFAEPEVEDLADVACPTCE
GTRLNATARAVSFGASRADGLGGIGITELARMSVTEVRQWFEGLALTGREAEIARDLVPE
IKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHAR
DNQILLDALHKLGDKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEGSVADIQA
AGDSQTGRYLRDAIRHPLQARRLIPSPDPQAEDSGNWLTVHGADLHNLQGVTATLPLHRL
VVVTGVSGSGKSTLARDVLLASVQAVVIQRMTKAGRDADAAGKRPAWSGCARVEGYETID
RVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKARGYGPARFSFNTGEGRCAGC
DGAGVRTIEMSFLPDVKVPCEVCHGARFNPETLAVSWRGKSIGEVLQMEVDEAVEFFAAM
PNISHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLY
VLDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGR
IVAAAPPEEVVRLGTHTGVALAPVLAR