Protein Info for ABID97_RS24645 in Variovorax sp. OAS795

Annotation: autotransporter outer membrane beta-barrel domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1744 transmembrane" amino acids 34 to 53 (20 residues), see Phobius details PF13018: ESPR" amino acids 1 to 47 (47 residues), 51.5 bits, see alignment (E = 1.1e-17) PF18883: AC_1" amino acids 1238 to 1340 (103 residues), 96.5 bits, see alignment 1e-31 TIGR01414: outer membrane autotransporter barrel domain" amino acids 1249 to 1744 (496 residues), 253.4 bits, see alignment E=2.3e-79

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1744 amino acids)

>ABID97_RS24645 autotransporter outer membrane beta-barrel domain-containing protein (Variovorax sp. OAS795)
MNTSYRSVYNEALGAWVATSELSTARGKKSSSGATLVAALVATAALGGSPFAWAANECGV
DAAGADTVTCGAGASFPGGISYINSDGLTLTLESNSAGPVAAPAIQLQSSGTNANNLTVN
GNRFNGVTATGAGNHGIYVNSAGTAGDAAVITGLETLPRTVTTNGSDAAGIYSRVSNPVG
TGSATVLLQEGGVVINTSGQNAVGIRAINEGLGNADINTTFADVTTTGTAAHGAYAAVTN
TGSTANSAITVNRGGGFNTAGDGSYGLYAHNLGLGSTEVYFSGAGLADIKTTGLGSPGIV
AFGANPSGTGSVSVYTDGHVTTSGNNSYGLQAVSDGLGTVSAVSVGSINTTGSSAVGLYG
LINNPASTATVSAAADNGSITTAGTNAPGVLSLNRGLGDAVATSNASITTTGNTSSALVA
QVANATSPGTATATNISVINTAGATSHGVFALNRGLGAANASLTDGSVTTTGASSDAVRA
EVSNVASPSAATALMSGVAISTSGPSSFGVSAINSGLGNADVQVTAGKIDTVGSSAYGAY
ATINNAKSAADATLTMTAGQVTTTGTGSSGLVAQNYGLGDVQVTVSGVSSVTTASAVGVS
ATSNNTGGSGTVDVVVSGASVSAGGDFSHGVLGSTNGLGAVSILNEGGTISTTGQYATGV
RGVISNPSSTAAVTTTNTQVGNVGTITTTADNALGMYSLNNGLGNAVATSTGGITTSGAS
SSALVAQVGNAASSGTATASNIDGAISTGGSASHGVYALNQGLGEASAAMSGGTISTGGL
ASHGIYALNQGVGVASAAMSGGTVTTQGDSAMGLFARVSNPASAAATTATLDGGDITTLG
AGAYGLYSLNEGLGAANAALSGTGVVTTSGDGSHGVVAQVANTASTAAATASMSGGALTT
LRADSFGLYSLNQGLGASNATLAGGDIATNNVRSYGVLSQIDNAASTATATATVSGGTVT
TSGDASTGVASITAGTGVALVQMSAGTVEAVAVNSDGLLASSAGGTYQVSLTGGSVKSGA
GLAAGIHTAAAGGGTIDIGAAATVDGAYSGIAIRDGDPARTGTDTLGGNATVTTAGTVTG
DAILGLGHDSFSLTGGSYTGSIFGDDKLASASDGNDRFTWTGGTLAGGFYGQNGSDTALV
SAPGYNASQMLDGGDDVSAADGWVDTLTLKGLTVTAGGDTLRNWETLVLDDTRLTLAGNP
LTVGAGVDASGNPMGLVIQPTASVFMGQPAFTINGDVHNAGQIDLRTATPGNVLSLYGNY
AGTNGIVRLNTSLGGDASATDKLVVNGNTSGTTRVFVTNVGGAGAATVNGIQVVQVSGSS
SDGNFTLAAPVQAGAYEYGLHRGGRTDGDANSFYLSSTYNTPVPAPAPAPAPAPAPAPAP
APGASPAPAPAPAPAAAPVPAPAPIPVRPPEVLRPAVAGYAMGPMASTELGLSLLGSLHK
RVGEQQSLKWDHCGCGDAAPGDQAWGRVQASRLNVDGQNQFGFAQNQKFFQVGKDLMVRY
SPEAGDKSRSHTGLSLGYGNAGAEFSDRRREAAGMGAYTGRMKAEMLTLGAYHTRYADNG
SYLDLVGQLHLARNQYTDKYADKATQRGAGLGLSAEVGRPWQIGDSQWLIEPQAQLTYQA
TRYRGFADRVSAVDGFTSQSLRARLGARLAWNDKAERADKLTRTNTFYVTANLVHEFLDP
ETVTVGGTQVREQWGKKTWAELGLGAQLPLSKSTYLYGGLQYQRALGGGGRDGFAGQAGV
RVSW