Protein Info for ABID97_RS24610 in Variovorax sp. OAS795

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 95 to 111 (17 residues), see Phobius details PF00126: HTH_1" amino acids 5 to 64 (60 residues), 78.4 bits, see alignment E=3.1e-26 PF03466: LysR_substrate" amino acids 91 to 295 (205 residues), 104.1 bits, see alignment E=7.2e-34

Best Hits

KEGG orthology group: None (inferred from 70% identity to bge:BC1002_4324)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>ABID97_RS24610 LysR family transcriptional regulator (Variovorax sp. OAS795)
MTFDLQQLVAFNAIVSSGSLGRAADALNITQPALSRTIRRLEEQAGAPLFERHSKGMQLT
DVGRALQPHALLLQRESEHASENIKAMLGLAKGTIRVGAVGSIACLVLPLAIGRTCKKWP
NLQVQIIEGVWDRLADALVSHEIDLALGVDTEDTGEIVAVKDCRWEDTSYVVAGRHHPLR
KKPKLKLSDTLSERWAILPKGTGPFEHMKSVFARQNLALPNVVVETRSVMALKSLIGHSG
FLGWMPAPMYDAERKAGLIDALDIPGASDKRILTAFRRRAGMLPGPSVKLLEELRAVTLV
SLKHDRP