Protein Info for ABID97_RS24360 in Variovorax sp. OAS795

Annotation: peptidoglycan-associated lipoprotein Pal

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR02802: peptidoglycan-associated lipoprotein" amino acids 63 to 165 (103 residues), 126.6 bits, see alignment E=1.9e-41 PF00691: OmpA" amino acids 64 to 159 (96 residues), 84.3 bits, see alignment E=3.2e-28

Best Hits

KEGG orthology group: None (inferred from 86% identity to vap:Vapar_4460)

Predicted SEED Role

"18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (166 amino acids)

>ABID97_RS24360 peptidoglycan-associated lipoprotein Pal (Variovorax sp. OAS795)
MNSSYRILTVVTLAASLAACGTAATSGREDATYYYSNKATPVAKVQPPPPAAPVVNGPGA
KIVYFNFDKYHIRTQDRKIVEAHADFLRNRPASKVMIEGHTDSRGGREYNLALGQRRAES
VQRALTQLGVPGERIEAVSWGIEKPASPETTEEGYQLNRRAEFSYR