Protein Info for ABID97_RS24285 in Variovorax sp. OAS795

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 transmembrane" amino acids 146 to 164 (19 residues), see Phobius details PF16968: TadZ_N" amino acids 25 to 132 (108 residues), 30.9 bits, see alignment E=1e-11

Best Hits

KEGG orthology group: K02282, pilus assembly protein CpaE (inferred from 75% identity to vap:Vapar_4446)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>ABID97_RS24285 histidine kinase (Variovorax sp. OAS795)
MNAPRDNLPETGAETYLFASPDSRHITWLTDALSPSGTLVILPGEPESIDERIAMLDPAA
VFLDFSGGHAAAAGELHQRLKREWPTLPVLATGVSAEPASMLAALRAGVDDFIDMSAPAA
DAVNTLRKLLERHSGMQNRARGCTLSLLGARAGIGVTTLAASLSLMLHDQLSQTAAPPHG
RNARRGVALLDLGLPARDGLLYLDTQSAFSFVDGVRNLRRLDQTLLHTALAHHASGVAVL
PLPASLAQVREISHADSVALIKRLGDFFDFQIADLGGFSTMDFVAQTVKAAQRNWVVCDQ
SIGAIVSTANMLKELRTRGIETDRLSLVVNKFDSHVGLPAKDIADRLELPLHHVVPARGT
QLLAAASRGEMLVRTARTDAYTQAVAALARGLHQEYACGAAQAPAKESRWSARMSQIAGL
WKSSSES