Protein Info for ABID97_RS24260 in Variovorax sp. OAS795

Annotation: L,D-transpeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03734: YkuD" amino acids 189 to 322 (134 residues), 75.2 bits, see alignment E=4.2e-25

Best Hits

KEGG orthology group: None (inferred from 90% identity to vap:Vapar_4441)

Predicted SEED Role

"ErfK/YbiS/YcfS/YnhG family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>ABID97_RS24260 L,D-transpeptidase family protein (Variovorax sp. OAS795)
MLAALAAASALLLSATGAAHASTRPAAPPKAKAASSRAAHLPTTARDAKPRAKKPAATQV
ASAARSVPRKAAAPSAALQQANGAEARLIAVYELFGRGHARPALAKARDLVRDYPNFQLA
QLVYADLLATQVPPAHGFSDASGIARLRSDPAMADLREESQRRLQALRDRPPAGSVPSQF
LALSTRSRYAIAVDASRSRLYLLENSDKGLQLVADYYVSVGKSGIGKVTEGDARTPLGVY
YITSNLDPKSLRDFYGAGALPINYPNPYDVRRGKTGGGIWLHGTPPQQFARAPLASDGCV
VMANPDLKQLLRKVQIGGTPVVTARSLQWISQPQAEKEAQSFTQAVAAWKDARASGNEAQ
LKKFYLPDFQRNNTRKSIEGFAVLRDELEYARGKRVQFKDMSYLHWRDGDDTMVATFGEV
FEGERSGRTRRQYWLRQGSEWKLFHEEILG