Protein Info for ABID97_RS23845 in Variovorax sp. OAS795

Annotation: biotin-dependent carboxyltransferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00724: biotin-dependent carboxylase uncharacterized domain
  • amino acids 4 to 320 (317 residues), 312.2 bits, E=1.8e-97
• PF02626: CT_A_B
  • amino acids 24 to 297 (274 residues), 301.1 bits, E=4.1e-94

Best Hits

KEGG orthology group: None (inferred from 91% identity to vap:Vapar_4366)

Predicted SEED Role

"Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)" (EC 3.5.1.54)

MetaCyc Pathways

• L-citrulline degradation (3/3 steps found)
• cyanate degradation (3/3 steps found)
• urea degradation I (3/3 steps found)
• cyanuric acid degradation II (4/5 steps found)
• L-arginine degradation V (arginine deiminase pathway) (3/4 steps found)
• superpathway of allantoin degradation in yeast (3/6 steps found)
• cyanuric acid degradation I (2/5 steps found)
• uracil degradation III (2/5 steps found)
• superpathway of atrazine degradation (4/8 steps found)
• allantoin degradation IV (anaerobic) (2/9 steps found)

KEGG Metabolic Maps

• Arginine and proline metabolism
• Atrazine degradation
• Urea cycle and metabolism of amino groups

Isozymes

Compare fitness of predicted isozymes for: 3.5.1.54

Use Curated BLAST to search for 3.5.1.54

Protein Sequence (331 amino acids)

>ABID97_RS23845 biotin-dependent carboxyltransferase family protein (Variovorax sp. OAS795)
MMLVQKPGMLASVQDLGRHGQRQLGICPGGALDVLALTLANRLVGNADGAAGLEITMGGC
ELRFETATRIALVGDGFGARLDDAPLWPCWSVPVDAGEVLRLAGANAAGVKKAGLRSWLA
VAGGIDVPLVLGSRSTDLKAGFGGHEGRALRKGDRLALGPTALDTARLARRPFGLRGPDW
GSEEDESIALRVLPGPEFDQFTTASQAQLWSERWRITTQSNRMGSRLAGPELKRKRSADM
LSSGVIPGTIQVPPSGLPIILMGDAQTTGGYPRIGVVIRADLWKLAQAPLEGRLRLVQVD
MAEALEAWAEQQRYLAQVAHGLAAAGWTRPA