Protein Info for ABID97_RS23780 in Variovorax sp. OAS795

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 27 to 48 (22 residues), see Phobius details amino acids 89 to 113 (25 residues), see Phobius details amino acids 132 to 160 (29 residues), see Phobius details amino acids 206 to 231 (26 residues), see Phobius details amino acids 252 to 275 (24 residues), see Phobius details PF12911: OppC_N" amino acids 17 to 64 (48 residues), 29.9 bits, see alignment 4e-11 PF00528: BPD_transp_1" amino acids 105 to 288 (184 residues), 113.5 bits, see alignment E=1.1e-36

Best Hits

Swiss-Prot: 44% identical to GSID_SALTY: Glutathione transport system permease protein GsiD (gsiD) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 97% identity to vap:Vapar_4351)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>ABID97_RS23780 ABC transporter permease (Variovorax sp. OAS795)
MTAMTVPSAAALKVAGFWRRAVRHRSFVLGGVLTLLLLLAATVSLVWTPWSPYEMDMASK
LKPPSGSHWLGTDTYGRDVASLLLVGARASILVGVIAVGIGLVVGTALGLLAAARRGWVE
EAIMRLTDFSLAFPAILSAIMMTAVFGAGIVNAIIAIGIYNIPTFARITRASANAIWSRE
YVAAARACGKGSFAITMQHVLPNISAVLIVQITIRFAIAILAEAALSYLGLGTQPPQPSW
GRMLSEAQTMMFQSPLLAVFPGMAIAMAVLGLNLLGDGLRDLLDPRLARAR