Protein Info for ABID97_RS23585 in Variovorax sp. OAS795

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1136 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 36 to 56 (21 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 373 to 395 (23 residues), see Phobius details amino acids 407 to 425 (19 residues), see Phobius details amino acids 437 to 456 (20 residues), see Phobius details amino acids 478 to 500 (23 residues), see Phobius details amino acids 513 to 533 (21 residues), see Phobius details amino acids 664 to 683 (20 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 116 to 343 (228 residues), 63.6 bits, see alignment E=8.7e-21 PF00535: Glycos_transf_2" amino acids 120 to 287 (168 residues), 64.5 bits, see alignment E=4.3e-21 PF03552: Cellulose_synt" amino acids 173 to 285 (113 residues), 31.8 bits, see alignment E=2.1e-11 PF13506: Glyco_transf_21" amino acids 194 to 341 (148 residues), 32.1 bits, see alignment E=3e-11 PF13632: Glyco_trans_2_3" amino acids 200 to 419 (220 residues), 68.8 bits, see alignment E=2.2e-22 PF07238: PilZ" amino acids 538 to 628 (91 residues), 22.7 bits, see alignment E=3.6e-08 TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 678 to 1130 (453 residues), 294.9 bits, see alignment E=5.6e-92 PF02321: OEP" amino acids 727 to 918 (192 residues), 54.3 bits, see alignment E=5.6e-18 amino acids 946 to 1128 (183 residues), 89.2 bits, see alignment E=1.1e-28

Best Hits

KEGG orthology group: K00694, cellulose synthase (UDP-forming) [EC: 2.4.1.12] (inferred from 91% identity to vap:Vapar_4267)

Predicted SEED Role

"Cellulose synthase (UDP-forming) (EC 2.4.1.12)" (EC 2.4.1.12)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1136 amino acids)

>ABID97_RS23585 efflux transporter outer membrane subunit (Variovorax sp. OAS795)
MSHLIATPEFQLNALVAGLALLLMTWGRVQRASDRMLFGGLTALLLMRYAVWRVVATMPP
SDLGFETLFAWVFLAFELTAIVYTLMSIHMLVRRRDNHHLADRGEAELRRLGAKVPAVDV
FICTYNEELDVLEKTIIAAQAIDYPQLKVWVLDDTRRDWLRDYCERKGVHYARRPDNSHA
KAGNLNNGLRISADVTNAPYILVLDADFAPQRQIVYRMLGLFSDRKVGLVQTPQFYYNAD
PIQHNLRATDSWVDEQRVFFDVLQPAKDAVDSAFCVGTSFIVRRDLITAAGGFPVGSVCE
DIHTTYLLLRHGYITRWLGERLSNGLSAESIIDYINQRSRWCLGTVQLALLPQGPLRGKG
YSLSARMHFLHGLLHWLGKPFMALIMLAPALYWYAGVSVFHATPQAFAAYGLPPLVMFWA
YSYWISERRCLPVFSEVSQLVAAMAVTSTLASAMLRPFGRPFKVTNKGLDRTKTVVHWKL
VAMFGGLLVALQLGGASVALSGEALTPGDELNLVWTGIALLLCLAALMACVDLPRPDQEE
RFPWRARTRVRTAAGEGEARFVNIALDGALMEAKAPLKRLRAGQPLEVYVDSVGWLPALV
AGRNSAGAELKFAGITEAQRESLVSHVFNVPPSHVAVQVRPWGAASALLASAGFGAPGAG
FMRLFLRICLLVLATSVVLVVSGCNLTPPLKQPDTALPGQWPAGTAVPKAEPVDWRGFVQ
DDELRGLIATALTQNRDLRVYAAKAREARAIYAGSRASLFPQIGLSGHAQRAQTTPQGSL
SPIGNVPTDGGVSNSFDVQAGVTSYELDFFGRQQSTAQQSGALAEAGDKDFAAARMNLVG
EVSNAYLTLRADRALLALANANESGLSSNADMIGRAKAAGGAAQLDVYRAQSLLQNARVR
QEEYRMRVAQDLQWLNVLVGQPVPPDTGSTRPWPERSTAPVTAGLPSSLLQRRPDLLAAY
SRVEAANSGVGAAKAAMLPTISLTALAGGISGDLSSLLSSGNRSWAGVLGVSLPLFDWGR
RSANITANEERLAAAMASYEYAAQVAFKETANALIAEDHLRPQLEAQQARVQSLEKVASI
SRTRFRGGLEDYFSSQDAQRELYAEQQQLIELQLKAAVNVVNLYKALGGGWGGAQG