Protein Info for ABID97_RS23570 in Variovorax sp. OAS795

Annotation: AsmA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 673 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 619 to 637 (19 residues), see Phobius details PF05170: AsmA" amino acids 6 to 553 (548 residues), 351.1 bits, see alignment E=1.6e-108 PF13502: AsmA_2" amino acids 409 to 582 (174 residues), 56.7 bits, see alignment E=2.8e-19

Best Hits

KEGG orthology group: K07290, hypothetical protein (inferred from 88% identity to vap:Vapar_4261)

Predicted SEED Role

"exported protein, conserved"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (673 amino acids)

>ABID97_RS23570 AsmA family protein (Variovorax sp. OAS795)
MKSMFPRIAGWTLLLLSVLVAICFVVALNFDWNRARPWINQRVGEATGRPFAINGDLVLQ
WDSPEAETGWRRWVPWPRLKAQDITLGNADWGQSGPHLAQIRQLTFSLNPLPLLNHTIRI
PTLELDGPVLSLERTADGKNNWTLAAADNAAPSAWKLDLQRLVLSHGTVKLVDAAAKIDM
KIDIDSLPQESAEGYGIGWKLGGTFRNTPVRGSGQAGAVLSLQQDSKPYPLQAGVQIGAT
RIDVAGTLTKPDALAALDLRLKLSGASMAHLYPITGITLPNTPPFSTEGHLVGKLDKAGG
RWLYENFKGSVGASDIAGTLEYISRQPRPLLRGQVQSNQLRLEDLAPLIGADSNASKAKR
GAAAVQPAGKVLPVEKFDTASWGSIDAEVKFAGRKILHAKDLPIESLVADLHLEDSVLSL
TPLSFGVAGGTLAATVKLDGRQNPIRANLQLSARRLKIKELIPSMDTMRASLGEVGGDAA
LSASGNSIGTLLGTSNGEVKALVSKGTISKFLLEAMGLNIGNVVATQLFGDRQVQLNCLV
SDFKVTQGVMQARSFVLDTDESIIEVTGLINLATEQLALEIQPRNKALRVLSLRSPLYVK
GTLKNPDVGVDKGAVALKLGAAVALGAVAPVAALLPLLNVGTPQEFAGCAPLEAAAREKP
KAPATRAQKPRKQ